Comparative analysis of the Pocillopora damiconis genome highlights roles of immune system in coral evolution
Cunning R et al. Scientific Reports. 2018 October 31.

Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci
Lilue J et al. Nature Genetics. 2018 Oct 1.

The genome of the oyster Saccostrea offers insight into the environmental resilience of bivalves 
Powell D et al. DNA Research. 2018 Aug 31.

Chicago® and Dovetail™ Hi-C proximity ligation yield chromosome length scaffolds of Ixodes scapularis genome
Nuss AB et al. 2018 Aug 15; Pre-print*.

Stout camphor tree genome fills gaps in understanding of flowering plant genome and gene family evolution
Chaw SM et al. 2018 July 18; Pre-print*.

Chromosome-scale comparative sequence analysis unravels molecular mechanisms of genome evolution between two wheat cultivars
Thind AK et al. 2018 July 10 BMC Genome Biology.

Decimation by sea star wasting disease and rapid genetic change in keystone species, Pisaster ochracceus 
Schiebelhut LM et al. Proc Natl Acad Sci U S A. 2018. pii: 201800285. doi: 10.1073/pnas.1800285115. 

The African Bullfrog (Pyxicephalus adspersus) genome unites the two ancestral ingredients for making vertebrate sex chromosomes
Denton RD et al. G3 (Bethesda). 2018 May 24; Pre-print*.

Improved Genome Assembly and Annotation for the Rock Pigeon (Columba livia)
Holt C et al. G3 (Bethesda). 2018 May 4;8(5):1391-1398. doi: 10.1534/g3.117.300443.

A High-Quality Reference Genome for the Invasive Mosquitofish Gambusia affinis Using a Chicago Library
Hoffberg SL et al. G3 (Bethesda). 2018 Apr 27. pii: g3.200101.2018. doi: 10.1534/g3.118.200101.

High quality whole genome sequence of an abundant Holarctic odontocete, the harbour porpoise (Phocoena phocoena)
Autenrieth M et al. 2018 Apr 19; Pre-print*.

Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat
Medoza MLZ et al. Nat Ecol Evol. 2018 Apr;2(4):659-668. doi: 10.1038/s41559-018-0476-8.

EquCab3, an Updated Reference Genome for the Domestic Horse
Kalbfleisch TS et al. 2018 Apr 25; Pre-print*.

The sea lamprey germline provides insights into programmed genome rearrangements and vertebrate evolution
Smith JJ et al. Nat Genet. 2018 Feb;50(2):270-277. doi: 10.1038/s41588-017-0036-1.

Whole-genome assembly of the coral reef Pearlscale Pygmy Angelfish (Centropyge vrolikii)
Fernandez-Silva I et al. Sci Rep. 2018 Jan 24;8(1):1498. doi: 10.1038/s41598-018-19430-x.

A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan_tro_3.0)
Kuderna LFK et al. Sci Rep. 2017 Nov 1;6(11):1-6.doi:10.1093/gigascience/gix098.

A critical comparison of technologies for a plant genome sequencing project 
Paajanen P et al. 2017 Oct 11; Pre-print*.

Strategies for optimizing BioNano and Dovetail explored through a second reference quality assembly for the legume model, Medicago truncatula
Moll KM et al. BMC Genomics. 2017 Aug 4;18(1):578. doi: 10.1186/s12864-017-3971-4.

Rapid cloning of genes in hexaploid wheat using cultivar-specific long-range chromosome assembly
Thind AK et al. Nat Biotechnol. 2017 Aug;35(8):793-796. doi: 10.1038/nbt.3877.

The house spider genome reveals an ancient whole-genome duplication during arachnid evolution
Schwager EE et al. BMC Biol. 2017 Jul 31;15(1):62. doi: 10.1186/s12915-017-0399-x.

The Molecular Genetic Basis of Herbivory between Butterflies and their Host-Plants
Nallu S et al.2017 Jun 23; Pre-print*.

Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling
Rice ES et al. Genome Res. 2017 May;27(5):686-696. doi: 10.1101/gr.213595.116.

Improving and correcting the contiguity of long-read genome assemblies of three plant species using optical mapping and chromosome conformation capture data
Jiao WB et al. Genome Res. 2017 May;27(5):778-786. doi: 10.1101/gr.213652.116.

Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce
Reyes-Chin-Wo S et al. Nat Commun. 2017 Apr 12;8:14953. doi: 10.1038/ncomms14953.

The genome of Chenopodium quinoa
Jarvis DE et al. Nature. 2017 Feb 16;542(7641):307-312. doi: 10.1038/nature21370.

De novo hybrid assembly of the rubber tree genome reveals evidence of paleotetraploidy in Hevea species
Pootakham W et al. Sci Rep. 2017 Feb 2;7:41457. doi: 10.1038/srep41457.

The draft genome of tropical fruit durian (Durio zibethinus)
Teh BT et al. Nat Genet. 2017 Nov;49(11):1633-1641. doi: 10.1038/ng.3972.

Genetic architecture drives seasonal onset of hibernation in the 13-lined ground squirrel
Grabek KR et al. 2017 Dec 2; Pre-print*.

Genome evolution in the allotetraploid frog Xenopus laevis
Session AM et al. Nature. 2016 Oct 20;538(7625):336-343. doi: 10.1038/nature19840.

Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity
Bredeson JV et al. Nat Biotechnol. 2016 May;34(5):562-70. doi: 10.1038/nbt.3535.

Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
Putnam N et al. Genome Res. 2016 Mar;26(3):342-50. doi: 10.1101/gr.193474.115.

*Pre-print articles available on bioRxiv