Beyond the Contact Matrix: Analyzing Micro-C Data

Key discussion points:

  • How to build a contact matrix at nucleosome level resolution
  • Basic Feature calling
    • A/B compartments
    • TADs
    • Loops
  • Identifying Enhancer-Promoter contacts
  • How to Quickly plot regions of interest
  • Building aggregated matrices around other signals like ATAC-seq and ChIP-seq peaks